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getDEE2: Programmatic access to the DEE2 RNA expression dataset1 years ago
Background | Getting started | Searching for datasets of interest starting with accession numbers | Fetching DEE2 data using SRA run accession numbers | Downstream analysis | Legacy function | Large project bundles | Session Info
getDEE2 1.23.0Mark Ziemann & Antony KaspigetDEE2.Rmd
Applying mitch to pathway analysis of Infinium Methylation array data2 years ago
Background | Requirements | Gene sets | Probe gene relationship for HM450K array data | Update deprecated gene symbols | Importing profiling data | Calculating enrichment | Downstream presentation | Probe gene relationship for EPIC array data | Session Info
mitch 1.25.0Antony Kaspi & Mark ZiemanninfiniumMethArrayWorkflow.Rmd
mitch Workflow2 years ago
Background | Importing gene sets | Importing profiling data | Calculating enrichment | Generate a HTML report | Generate high resolution plots | Network plot | Session Info
mitch 1.25.0Antony Kaspi & Mark ZiemannmitchWorkflow.Rmd